3D structure

PDB id
6ZVK (explore in PDB, NAKB, or RNA 3D Hub)
Description
The Halastavi arva virus (HalV) intergenic region IRES promotes translation by the simplest possible initiation mechanism
Experimental method
ELECTRON MICROSCOPY
Resolution
3.49 Å

Loop

Sequence
GUCAGC*GCGCC
Length
11 nucleotides
Bulged bases
6ZVK|1|K3|G|245
QA status
Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
Not in a motif group
Basepair signature
Not available
Number of instances in this motif group
0

Unit IDs

6ZVK|1|K3|G|241
6ZVK|1|K3|U|242
6ZVK|1|K3|C|243
6ZVK|1|K3|A|244
6ZVK|1|K3|G|245
6ZVK|1|K3|C|246
*
6ZVK|1|K3|G|274
6ZVK|1|K3|C|275
6ZVK|1|K3|G|276
6ZVK|1|K3|C|277
6ZVK|1|K3|C|278

Current chains

Chain K3
18S RIBOSOMAL RNA

Nearby chains

No other chains within 10Å

Coloring options:

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