IL_6ZVK_017

3D structure

PDB id

6ZVK (explore in PDB, NAKB, or RNA 3D Hub)

Description

The Halastavi arva virus (HalV) intergenic region IRES promotes translation by the simplest possible initiation mechanism

Experimental method

ELECTRON MICROSCOPY

Resolution

3.49 Å

Loop

Sequence

UAUCAACU*GGUGACCACG

Length

18 nucleotides

Bulged bases

6ZVK|1|K3|U|361, 6ZVK|1|K3|C|399

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

6ZVK|1|K3|U|359
6ZVK|1|K3|A|360
6ZVK|1|K3|U|361
6ZVK|1|K3|C|362
6ZVK|1|K3|A|363
6ZVK|1|K3|A|364
6ZVK|1|K3|C|365
6ZVK|1|K3|U|366
*
6ZVK|1|K3|G|394
6ZVK|1|K3|G|395
6ZVK|1|K3|U|396
6ZVK|1|K3|G|397
6ZVK|1|K3|A|398
6ZVK|1|K3|C|399
6ZVK|1|K3|C|400
6ZVK|1|K3|A|401
6ZVK|1|K3|C|402
6ZVK|1|K3|G|403

Current chains

Chain K3

18S RIBOSOMAL RNA

Nearby chains

Chain G3

Ribosomal protein S11

Chain T3

Ribosomal protein S23

Chain c3

40S ribosomal protein S8

Chain e2

Large subunit ribosomal RNA; LSU rRNA