IL_6ZVK_018
3D structure
- PDB id
- 6ZVK (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- The Halastavi arva virus (HalV) intergenic region IRES promotes translation by the simplest possible initiation mechanism
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.49 Å
Loop
- Sequence
- UUUCGA*UG
- Length
- 8 nucleotides
- Bulged bases
- 6ZVK|1|K3|U|368, 6ZVK|1|K3|C|369
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_6ZVK_018 not in the Motif Atlas
- Geometric match to IL_5Y58_001
- Geometric discrepancy: 0.2086
- The information below is about IL_5Y58_001
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- IL_45649.1
- Basepair signature
- cWW-L-cWW
- Number of instances in this motif group
- 2
Unit IDs
6ZVK|1|K3|U|366
6ZVK|1|K3|U|367
6ZVK|1|K3|U|368
6ZVK|1|K3|C|369
6ZVK|1|K3|G|370
6ZVK|1|K3|A|371
*
6ZVK|1|K3|U|393
6ZVK|1|K3|G|394
Current chains
- Chain K3
- 18S RIBOSOMAL RNA
Nearby chains
- Chain 32
- 60S RIBOSOMAL PROTEIN EL19
- Chain G3
- Ribosomal protein S11
- Chain c3
- 40S ribosomal protein S8
- Chain e2
- Large subunit ribosomal RNA; LSU rRNA
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