IL_6ZVK_022

3D structure

PDB id

6ZVK (explore in PDB, NAKB, or RNA 3D Hub)

Description

The Halastavi arva virus (HalV) intergenic region IRES promotes translation by the simplest possible initiation mechanism

Experimental method

ELECTRON MICROSCOPY

Resolution

3.49 Å

Loop

Sequence

CCCACUCC*GGGAGG

Length

14 nucleotides

Bulged bases

6ZVK|1|K3|G|507

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

6ZVK|1|K3|C|490
6ZVK|1|K3|C|491
6ZVK|1|K3|C|492
6ZVK|1|K3|A|493
6ZVK|1|K3|C|494
6ZVK|1|K3|U|495
6ZVK|1|K3|C|496
6ZVK|1|K3|C|497
*
6ZVK|1|K3|G|505
6ZVK|1|K3|G|506
6ZVK|1|K3|G|507
6ZVK|1|K3|A|508
6ZVK|1|K3|G|509
6ZVK|1|K3|G|510

Current chains

Chain K3

18S RIBOSOMAL RNA

Nearby chains

Chain I5

40S ribosomal protein S24

Chain d3

Ribosomal protein S9 (Predicted)

Chain j3

40S ribosomal protein S4