IL_6ZVK_023

3D structure

PDB id

6ZVK (explore in PDB, NAKB, or RNA 3D Hub)

Description

The Halastavi arva virus (HalV) intergenic region IRES promotes translation by the simplest possible initiation mechanism

Experimental method

ELECTRON MICROSCOPY

Resolution

3.49 Å

Loop

Sequence

AAU*AAUU

Length

7 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6ZVK_023 not in the Motif Atlas

Geometric match to IL_5UNE_009

Geometric discrepancy: 0.2369

The information below is about IL_5UNE_009

Detailed Annotation

Isolated non-canonical cWW contact

Broad Annotation

No text annotation

Motif group

IL_87720.1

Basepair signature

cWW-L-R-cWW

Number of instances in this motif group

8

Unit IDs

6ZVK|1|K3|A|528
6ZVK|1|K3|A|529
6ZVK|1|K3|U|530
*
6ZVK|1|K3|A|554
6ZVK|1|K3|A|555
6ZVK|1|K3|U|556
6ZVK|1|K3|U|557

Current chains

Chain K3

18S RIBOSOMAL RNA

Nearby chains

Chain d3

Ribosomal protein S9 (Predicted)

Chain s3

40S RIBOSOMAL PROTEIN ES30