IL_6ZVK_024
3D structure
- PDB id
- 6ZVK (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- The Halastavi arva virus (HalV) intergenic region IRES promotes translation by the simplest possible initiation mechanism
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.49 Å
Loop
- Sequence
- AGGGCAAGUC*GCU
- Length
- 13 nucleotides
- Bulged bases
- 6ZVK|1|K3|U|607
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_6ZVK_024 not in the Motif Atlas
- Geometric match to IL_5TBW_016
- Geometric discrepancy: 0.2012
- The information below is about IL_5TBW_016
- Detailed Annotation
- Isolated non-canonical cWW pair
- Broad Annotation
- Isolated non-canonical cWW pair
- Motif group
- IL_44258.2
- Basepair signature
- cWW-cWW-cWW
- Number of instances in this motif group
- 301
Unit IDs
6ZVK|1|K3|A|599
6ZVK|1|K3|G|600
6ZVK|1|K3|G|601
6ZVK|1|K3|G|602
6ZVK|1|K3|C|603
6ZVK|1|K3|A|604
6ZVK|1|K3|A|605
6ZVK|1|K3|G|606
6ZVK|1|K3|U|607
6ZVK|1|K3|C|608
*
6ZVK|1|K3|G|635
6ZVK|1|K3|C|636
6ZVK|1|K3|U|637
Current chains
- Chain K3
- 18S RIBOSOMAL RNA
Nearby chains
- Chain E1
- INTERNAL RIBOSOME ENTRY SITE
- Chain W3
- S5 DRBM domain-containing protein
- Chain Y3
- Ribosomal protein S3
- Chain d3
- Ribosomal protein S9 (Predicted)
- Chain s3
- 40S RIBOSOMAL PROTEIN ES30
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