IL_6ZVK_030

3D structure

PDB id

6ZVK (explore in PDB, NAKB, or RNA 3D Hub)

Description

The Halastavi arva virus (HalV) intergenic region IRES promotes translation by the simplest possible initiation mechanism

Experimental method

ELECTRON MICROSCOPY

Resolution

3.49 Å

Loop

Sequence

GAGC*GCC

Length

7 nucleotides

Bulged bases

6ZVK|1|K3|A|693

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6ZVK_030 not in the Motif Atlas

Geometric match to IL_3R1C_031

Geometric discrepancy: 0.2216

The information below is about IL_3R1C_031

Detailed Annotation

Isolated cWH basepair

Broad Annotation

No text annotation

Motif group

IL_08424.1

Basepair signature

cWW-cHW-cWW

Number of instances in this motif group

68

Unit IDs

6ZVK|1|K3|G|692
6ZVK|1|K3|A|693
6ZVK|1|K3|G|694
6ZVK|1|K3|C|695
*
6ZVK|1|K3|G|737
6ZVK|1|K3|C|738
6ZVK|1|K3|C|739

Current chains

Chain K3

18S RIBOSOMAL RNA

Nearby chains

Chain P3

40S RIBOSOMAL PROTEIN ES7