IL_6ZVK_031

3D structure

PDB id

6ZVK (explore in PDB, NAKB, or RNA 3D Hub)

Description

The Halastavi arva virus (HalV) intergenic region IRES promotes translation by the simplest possible initiation mechanism

Experimental method

ELECTRON MICROSCOPY

Resolution

3.49 Å

Loop

Sequence

GC*GUCC

Length

6 nucleotides

Bulged bases

6ZVK|1|K3|U|732, 6ZVK|1|K3|C|733

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6ZVK_031 not in the Motif Atlas

Geometric match to IL_4WF9_103

Geometric discrepancy: 0.2068

The information below is about IL_4WF9_103

Detailed Annotation

Multiple bulged bases

Broad Annotation

No text annotation

Motif group

IL_42626.2

Basepair signature

cWW-cWW

Number of instances in this motif group

14

Unit IDs

6ZVK|1|K3|G|698
6ZVK|1|K3|C|699
*
6ZVK|1|K3|G|731
6ZVK|1|K3|U|732
6ZVK|1|K3|C|733
6ZVK|1|K3|C|734

Current chains

Chain K3

18S RIBOSOMAL RNA

Nearby chains

Chain J5

Ribosomal protein S15a

Chain P3

40S RIBOSOMAL PROTEIN ES7