IL_6ZVK_034

3D structure

PDB id

6ZVK (explore in PDB, NAKB, or RNA 3D Hub)

Description

The Halastavi arva virus (HalV) intergenic region IRES promotes translation by the simplest possible initiation mechanism

Experimental method

ELECTRON MICROSCOPY

Resolution

3.49 Å

Loop

Sequence

CCCUCG*CCCGCGG

Length

13 nucleotides

Bulged bases

6ZVK|1|K3|U|760, 6ZVK|1|K3|C|761, 6ZVK|1|K3|C|783, 6ZVK|1|K3|C|785

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

6ZVK|1|K3|C|757
6ZVK|1|K3|C|758
6ZVK|1|K3|C|759
6ZVK|1|K3|U|760
6ZVK|1|K3|C|761
6ZVK|1|K3|G|762
*
6ZVK|1|K3|C|781
6ZVK|1|K3|C|782
6ZVK|1|K3|C|783
6ZVK|1|K3|G|784
6ZVK|1|K3|C|785
6ZVK|1|K3|G|786
6ZVK|1|K3|G|787

Current chains

Chain K3

18S RIBOSOMAL RNA

Nearby chains

Chain b3

40S ribosomal protein S6