IL_6ZVK_038

3D structure

PDB id

6ZVK (explore in PDB, NAKB, or RNA 3D Hub)

Description

The Halastavi arva virus (HalV) intergenic region IRES promotes translation by the simplest possible initiation mechanism

Experimental method

ELECTRON MICROSCOPY

Resolution

3.49 Å

Loop

Sequence

GACCGC*GAGGC

Length

11 nucleotides

Bulged bases

6ZVK|1|K3|C|877

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6ZVK_038 not in the Motif Atlas

Homologous match to IL_8P9A_416

Geometric discrepancy: 0.5311

The information below is about IL_8P9A_416

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

6ZVK|1|K3|G|874
6ZVK|1|K3|A|875
6ZVK|1|K3|C|876
6ZVK|1|K3|C|877
6ZVK|1|K3|G|878
6ZVK|1|K3|C|879
*
6ZVK|1|K3|G|907
6ZVK|1|K3|A|908
6ZVK|1|K3|G|909
6ZVK|1|K3|G|910
6ZVK|1|K3|C|911

Current chains

Chain K3

18S RIBOSOMAL RNA

Nearby chains

Chain 32

60S RIBOSOMAL PROTEIN EL19

Chain G3

Ribosomal protein S11

Chain P3

40S RIBOSOMAL PROTEIN ES7