IL_6ZVK_051

3D structure

PDB id

6ZVK (explore in PDB, NAKB, or RNA 3D Hub)

Description

The Halastavi arva virus (HalV) intergenic region IRES promotes translation by the simplest possible initiation mechanism

Experimental method

ELECTRON MICROSCOPY

Resolution

3.49 Å

Loop

Sequence

GA*UAC

Length

5 nucleotides

Bulged bases

6ZVK|1|K3|A|1695

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6ZVK_051 not in the Motif Atlas

Homologous match to IL_4V88_441

Geometric discrepancy: 0.1953

The information below is about IL_4V88_441

Detailed Annotation

Single bulged A

Broad Annotation

No text annotation

Motif group

IL_31462.1

Basepair signature

cWW-L-cWW

Number of instances in this motif group

127

Unit IDs

6ZVK|1|K3|G|1203
6ZVK|1|K3|A|1204
*
6ZVK|1|K3|U|1694
6ZVK|1|K3|A|1695
6ZVK|1|K3|C|1696

Current chains

Chain K3

18S RIBOSOMAL RNA

Nearby chains

Chain O3

40S RIBOSOMAL PROTEIN ES26

Chain W3

S5 DRBM domain-containing protein