IL_6ZVK_052

3D structure

PDB id

6ZVK (explore in PDB, NAKB, or RNA 3D Hub)

Description

The Halastavi arva virus (HalV) intergenic region IRES promotes translation by the simplest possible initiation mechanism

Experimental method

ELECTRON MICROSCOPY

Resolution

3.49 Å

Loop

Sequence

GGA*UU

Length

5 nucleotides

Bulged bases

6ZVK|1|K3|G|1207

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6ZVK_052 not in the Motif Atlas

Homologous match to IL_4V88_442

Geometric discrepancy: 0.358

The information below is about IL_4V88_442

Detailed Annotation

Single bulged G

Broad Annotation

No text annotation

Motif group

IL_00225.7

Basepair signature

cWW-L-cWW

Number of instances in this motif group

49

Unit IDs

6ZVK|1|K3|G|1206
6ZVK|1|K3|G|1207
6ZVK|1|K3|A|1208
*
6ZVK|1|K3|U|1691
6ZVK|1|K3|U|1692

Current chains

Chain K3

18S RIBOSOMAL RNA

Nearby chains

Chain E1

INTERNAL RIBOSOME ENTRY SITE

Chain O3

40S RIBOSOMAL PROTEIN ES26