IL_6ZVK_058
3D structure
- PDB id
- 6ZVK (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- The Halastavi arva virus (HalV) intergenic region IRES promotes translation by the simplest possible initiation mechanism
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.49 Å
Loop
- Sequence
- UGCAUGGC*GUCUGUGAUG
- Length
- 18 nucleotides
- Bulged bases
- 6ZVK|1|K3|C|1331, 6ZVK|1|K3|U|1494, 6ZVK|1|K3|G|1497
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_6ZVK_058 not in the Motif Atlas
- Homologous match to IL_8C3A_505
- Geometric discrepancy: 0.1834
- The information below is about IL_8C3A_505
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- IL_06463.1
- Basepair signature
- cWW-L-tHS-tSW-tWH-cWH-cWW-L-cWW
- Number of instances in this motif group
- 1
Unit IDs
6ZVK|1|K3|U|1329
6ZVK|1|K3|G|1330
6ZVK|1|K3|C|1331
6ZVK|1|K3|A|1332
6ZVK|1|K3|U|1333
6ZVK|1|K3|G|1334
6ZVK|1|K3|G|1335
6ZVK|1|K3|C|1336
*
6ZVK|1|K3|G|1491
6ZVK|1|K3|U|1492
6ZVK|1|K3|C|1493
6ZVK|1|K3|U|1494
6ZVK|1|K3|G|1495
6ZVK|1|K3|U|1496
6ZVK|1|K3|G|1497
6ZVK|1|K3|A|1498
6ZVK|1|K3|U|1499
6ZVK|1|K3|G|1500
Current chains
- Chain K3
- 18S RIBOSOMAL RNA
Nearby chains
- Chain E1
- INTERNAL RIBOSOME ENTRY SITE
- Chain E3
- S10_plectin domain-containing protein
- Chain H3
- ribosomal protein uS14
- Chain I3
- Ribosomal_S10 domain-containing protein
- Chain Y3
- Ribosomal protein S3
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