IL_6ZVK_064

3D structure

PDB id

6ZVK (explore in PDB, NAKB, or RNA 3D Hub)

Description

The Halastavi arva virus (HalV) intergenic region IRES promotes translation by the simplest possible initiation mechanism

Experimental method

ELECTRON MICROSCOPY

Resolution

3.49 Å

Loop

Sequence

ACCC*GGCGU

Length

9 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6ZVK_064 not in the Motif Atlas

Geometric match to IL_1D4R_001

Geometric discrepancy: 0.3357

The information below is about IL_1D4R_001

Detailed Annotation

Tandem non-canonical cWW pairs

Broad Annotation

No text annotation

Motif group

IL_15225.1

Basepair signature

cWW-cWW-cWW-cWW

Number of instances in this motif group

33

Unit IDs

6ZVK|1|K3|A|1414
6ZVK|1|K3|C|1415
6ZVK|1|K3|C|1416
6ZVK|1|K3|C|1417
*
6ZVK|1|K3|G|1428
6ZVK|1|K3|G|1429
6ZVK|1|K3|C|1430
6ZVK|1|K3|G|1431
6ZVK|1|K3|U|1432

Current chains

Chain K3

18S RIBOSOMAL RNA

Nearby chains

Chain B3

40S RIBOSOMAL PROTEIN US9

Chain H5

40S RIBOSOMAL PROTEIN ES19