IL_6ZVK_072

3D structure

PDB id

6ZVK (explore in PDB, NAKB, or RNA 3D Hub)

Description

The Halastavi arva virus (HalV) intergenic region IRES promotes translation by the simplest possible initiation mechanism

Experimental method

ELECTRON MICROSCOPY

Resolution

3.49 Å

Loop

Sequence

GUC*GUC

Length

6 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6ZVK_072 not in the Motif Atlas

Geometric match to IL_4V88_465

Geometric discrepancy: 0.2244

The information below is about IL_4V88_465

Detailed Annotation

Isolated non-canonical cWW pair

Broad Annotation

No text annotation

Motif group

IL_44258.2

Basepair signature

cWW-cWW-cWW

Number of instances in this motif group

301

Unit IDs

6ZVK|1|K3|G|1706
6ZVK|1|K3|U|1707
6ZVK|1|K3|C|1708
*
6ZVK|1|K3|G|1826
6ZVK|1|K3|U|1827
6ZVK|1|K3|C|1828

Current chains

Chain K3

18S RIBOSOMAL RNA

Nearby chains

Chain E1

INTERNAL RIBOSOME ENTRY SITE

Chain X3

60s ribosomal protein l41

Chain e2

Large subunit ribosomal RNA; LSU rRNA