IL_6ZVK_073

3D structure

PDB id

6ZVK (explore in PDB, NAKB, or RNA 3D Hub)

Description

The Halastavi arva virus (HalV) intergenic region IRES promotes translation by the simplest possible initiation mechanism

Experimental method

ELECTRON MICROSCOPY

Resolution

3.49 Å

Loop

Sequence

CGCU*AAAAG

Length

9 nucleotides

Bulged bases

6ZVK|1|K3|G|1709, 6ZVK|1|K3|A|1825

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

6ZVK|1|K3|C|1708
6ZVK|1|K3|G|1709
6ZVK|1|K3|C|1710
6ZVK|1|K3|U|1711
*
6ZVK|1|K3|A|1822
6ZVK|1|K3|A|1823
6ZVK|1|K3|A|1824
6ZVK|1|K3|A|1825
6ZVK|1|K3|G|1826

Current chains

Chain K3

18S RIBOSOMAL RNA

Nearby chains

Chain E1

INTERNAL RIBOSOME ENTRY SITE

Chain T3

Ribosomal protein S23

Chain e2

Large subunit ribosomal RNA; LSU rRNA