IL_6ZVK_079

3D structure

PDB id

6ZVK (explore in PDB, NAKB, or RNA 3D Hub)

Description

The Halastavi arva virus (HalV) intergenic region IRES promotes translation by the simplest possible initiation mechanism

Experimental method

ELECTRON MICROSCOPY

Resolution

3.49 Å

Loop

Sequence

CCU*ACG

Length

6 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6ZVK_079 not in the Motif Atlas

Geometric match to IL_4E48_002

Geometric discrepancy: 0.1979

The information below is about IL_4E48_002

Detailed Annotation

Isolated non-canonical cWW pair

Broad Annotation

Isolated non-canonical cWW pair

Motif group

IL_01003.1

Basepair signature

cWW-cWW-cWW

Number of instances in this motif group

174

Unit IDs

6ZVK|1|K3|C|1739
6ZVK|1|K3|C|1740
6ZVK|1|K3|U|1741
*
6ZVK|1|K3|A|1793
6ZVK|1|K3|C|1794
6ZVK|1|K3|G|1795

Current chains

Chain K3

18S RIBOSOMAL RNA

Nearby chains

Chain c3

40S ribosomal protein S8

Chain e2

Large subunit ribosomal RNA; LSU rRNA

Chain l2

Ribosomal protein L24