IL_6ZVK_084

3D structure

PDB id

6ZVK (explore in PDB, NAKB, or RNA 3D Hub)

Description

The Halastavi arva virus (HalV) intergenic region IRES promotes translation by the simplest possible initiation mechanism

Experimental method

ELECTRON MICROSCOPY

Resolution

3.49 Å

Loop

Sequence

GAACGCG*CUAAGC

Length

13 nucleotides

Bulged bases

6ZVK|1|d2|A|22, 6ZVK|1|d2|C|24

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

6ZVK|1|d2|G|21
6ZVK|1|d2|A|22
6ZVK|1|d2|A|23
6ZVK|1|d2|C|24
6ZVK|1|d2|G|25
6ZVK|1|d2|C|26
6ZVK|1|d2|G|27
*
6ZVK|1|d2|C|52
6ZVK|1|d2|U|53
6ZVK|1|d2|A|54
6ZVK|1|d2|A|55
6ZVK|1|d2|G|56
6ZVK|1|d2|C|57

Current chains

Chain d2

5S RIBOSOMAL RNA

Nearby chains

Chain G2

60S ribosomal protein L5

Chain Y2

Ribosomal protein L11