IL_6ZVK_094
3D structure
- PDB id
- 6ZVK (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- The Halastavi arva virus (HalV) intergenic region IRES promotes translation by the simplest possible initiation mechanism
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.49 Å
Loop
- Sequence
- CUGAAUUU*AUUAGUCAG
- Length
- 17 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_6ZVK_094 not in the Motif Atlas
- Homologous match to IL_8C3A_005
- Geometric discrepancy: 0.1903
- The information below is about IL_8C3A_005
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- IL_35728.2
- Basepair signature
- cWW-L-R-tSH-tHW-tHH-tHS-cWW-cWW
- Number of instances in this motif group
- 3
Unit IDs
6ZVK|1|e2|C|30
6ZVK|1|e2|U|31
6ZVK|1|e2|G|32
6ZVK|1|e2|A|33
6ZVK|1|e2|A|34
6ZVK|1|e2|U|35
6ZVK|1|e2|U|36
6ZVK|1|e2|U|37
*
6ZVK|1|e2|A|44
6ZVK|1|e2|U|45
6ZVK|1|e2|U|46
6ZVK|1|e2|A|47
6ZVK|1|e2|G|48
6ZVK|1|e2|U|49
6ZVK|1|e2|C|50
6ZVK|1|e2|A|51
6ZVK|1|e2|G|52
Current chains
- Chain e2
- 28S RIBOSOMAL RNA
Nearby chains
- Chain 12
- Ribosomal protein L15
- Chain C2
- Ribosomal protein L37
- Chain F2
- eL42
- Chain a7
- 60S ribosomal protein L13
- Chain q2
- uL15
Coloring options: