IL_6ZVK_096

3D structure

PDB id

6ZVK (explore in PDB, NAKB, or RNA 3D Hub)

Description

The Halastavi arva virus (HalV) intergenic region IRES promotes translation by the simplest possible initiation mechanism

Experimental method

ELECTRON MICROSCOPY

Resolution

3.49 Å

Loop

Sequence

CGAA*UG

Length

6 nucleotides

Bulged bases

6ZVK|1|e2|G|119

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6ZVK_096 not in the Motif Atlas

Geometric match to IL_5XWP_001

Geometric discrepancy: 0.2018

The information below is about IL_5XWP_001

Detailed Annotation

Multiple bulged bases

Broad Annotation

No text annotation

Motif group

IL_82107.4

Basepair signature

cWW-cWW

Number of instances in this motif group

30

Unit IDs

6ZVK|1|e2|C|118
6ZVK|1|e2|G|119
6ZVK|1|e2|A|120
6ZVK|1|e2|A|121
*
6ZVK|1|e2|U|152
6ZVK|1|e2|G|153

Current chains

Chain e2

28S RIBOSOMAL RNA

Nearby chains

Chain 12

Ribosomal protein L15

Chain A2

uL29

Chain V2

60S RIBOSOMAL PROTEIN EL8