IL_6ZVK_097
3D structure
- PDB id
- 6ZVK (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- The Halastavi arva virus (HalV) intergenic region IRES promotes translation by the simplest possible initiation mechanism
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.49 Å
Loop
- Sequence
- AU*ACAUGU
- Length
- 8 nucleotides
- Bulged bases
- 6ZVK|1|e2|U|150
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_6ZVK_097 not in the Motif Atlas
- Homologous match to IL_5TBW_007
- Geometric discrepancy: 0.2107
- The information below is about IL_5TBW_007
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- IL_19724.3
- Basepair signature
- cWW-cWW-L-cWW-L
- Number of instances in this motif group
- 4
Unit IDs
6ZVK|1|e2|A|121
6ZVK|1|e2|U|122
*
6ZVK|1|e2|A|147
6ZVK|1|e2|C|148
6ZVK|1|e2|A|149
6ZVK|1|e2|U|150
6ZVK|1|e2|G|151
6ZVK|1|e2|U|152
Current chains
- Chain e2
- 28S RIBOSOMAL RNA
Nearby chains
- Chain 12
- Ribosomal protein L15
- Chain V2
- 60S RIBOSOMAL PROTEIN EL8
- Chain h2
- 5.8S ribosomal RNA; 5.8S rRNA
Coloring options: