IL_6ZVK_101
3D structure
- PDB id
- 6ZVK (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- The Halastavi arva virus (HalV) intergenic region IRES promotes translation by the simplest possible initiation mechanism
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.49 Å
Loop
- Sequence
- UCGUGG*CG
- Length
- 8 nucleotides
- Bulged bases
- 6ZVK|1|e2|C|185, 6ZVK|1|e2|G|186, 6ZVK|1|e2|U|187
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_6ZVK_101 not in the Motif Atlas
- Geometric match to IL_1KXK_003
- Geometric discrepancy: 0.251
- The information below is about IL_1KXK_003
- Detailed Annotation
- Multiple bulged bases
- Broad Annotation
- No text annotation
- Motif group
- IL_42626.2
- Basepair signature
- cWW-cWW
- Number of instances in this motif group
- 14
Unit IDs
6ZVK|1|e2|U|184
6ZVK|1|e2|C|185
6ZVK|1|e2|G|186
6ZVK|1|e2|U|187
6ZVK|1|e2|G|188
6ZVK|1|e2|G|189
*
6ZVK|1|e2|C|252
6ZVK|1|e2|G|253
Current chains
- Chain e2
- 28S RIBOSOMAL RNA
Nearby chains
- Chain C2
- Ribosomal protein L37
- Chain a7
- 60S ribosomal protein L13
- Chain o2
- Ribosomal protein L26
- Chain t2
- uL4
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