IL_6ZVK_108

3D structure

PDB id

6ZVK (explore in PDB, NAKB, or RNA 3D Hub)

Description

The Halastavi arva virus (HalV) intergenic region IRES promotes translation by the simplest possible initiation mechanism

Experimental method

ELECTRON MICROSCOPY

Resolution

3.49 Å

Loop

Sequence

GGUC*GCUAC

Length

9 nucleotides

Bulged bases

6ZVK|1|e2|G|444

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

6ZVK|1|e2|G|443
6ZVK|1|e2|G|444
6ZVK|1|e2|U|445
6ZVK|1|e2|C|446
*
6ZVK|1|e2|G|1300
6ZVK|1|e2|C|1301
6ZVK|1|e2|U|1302
6ZVK|1|e2|A|1303
6ZVK|1|e2|C|1304

Current chains

Chain e2

28S RIBOSOMAL RNA

Nearby chains

Chain h2

5.8S ribosomal RNA; 5.8S rRNA

Chain v2

eL32

Chain x2

eL33