IL_6ZVK_109

3D structure

PDB id

6ZVK (explore in PDB, NAKB, or RNA 3D Hub)

Description

The Halastavi arva virus (HalV) intergenic region IRES promotes translation by the simplest possible initiation mechanism

Experimental method

ELECTRON MICROSCOPY

Resolution

3.49 Å

Loop

Sequence

CC*GCG

Length

5 nucleotides

Bulged bases

6ZVK|1|e2|C|696

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6ZVK_109 not in the Motif Atlas

Geometric match to IL_8GLP_083

Geometric discrepancy: 0.3952

The information below is about IL_8GLP_083

Detailed Annotation

Single bulged C

Broad Annotation

No text annotation

Motif group

IL_05642.6

Basepair signature

cWW-L-cWW

Number of instances in this motif group

72

Unit IDs

6ZVK|1|e2|C|459
6ZVK|1|e2|C|460
*
6ZVK|1|e2|G|695
6ZVK|1|e2|C|696
6ZVK|1|e2|G|697

Current chains

Chain e2

28S RIBOSOMAL RNA

Nearby chains

Chain J2

60S RIBOSOMAL PROTEIN EL28

Chain T2

60S ribosomal protein L6