IL_6ZVK_111

3D structure

PDB id

6ZVK (explore in PDB, NAKB, or RNA 3D Hub)

Description

The Halastavi arva virus (HalV) intergenic region IRES promotes translation by the simplest possible initiation mechanism

Experimental method

ELECTRON MICROSCOPY

Resolution

3.49 Å

Loop

Sequence

AUUCAAC*GCGCAUUU

Length

15 nucleotides

Bulged bases

6ZVK|1|e2|C|685, 6ZVK|1|e2|A|686

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

6ZVK|1|e2|A|466
6ZVK|1|e2|U|467
6ZVK|1|e2|U|468
6ZVK|1|e2|C|469
6ZVK|1|e2|A|470
6ZVK|1|e2|A|471
6ZVK|1|e2|C|472
*
6ZVK|1|e2|G|682
6ZVK|1|e2|C|683
6ZVK|1|e2|G|684
6ZVK|1|e2|C|685
6ZVK|1|e2|A|686
6ZVK|1|e2|U|687
6ZVK|1|e2|U|688
6ZVK|1|e2|U|689

Current chains

Chain e2

28S RIBOSOMAL RNA

Nearby chains

Chain J2

60S RIBOSOMAL PROTEIN EL28

Chain T2

60S ribosomal protein L6