IL_6ZVK_113

3D structure

PDB id

6ZVK (explore in PDB, NAKB, or RNA 3D Hub)

Description

The Halastavi arva virus (HalV) intergenic region IRES promotes translation by the simplest possible initiation mechanism

Experimental method

ELECTRON MICROSCOPY

Resolution

3.49 Å

Loop

Sequence

GCCGUGU*ACCGGCGAC

Length

16 nucleotides

Bulged bases

6ZVK|1|e2|C|665, 6ZVK|1|e2|G|666

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

6ZVK|1|e2|G|488
6ZVK|1|e2|C|489
6ZVK|1|e2|C|490
6ZVK|1|e2|G|491
6ZVK|1|e2|U|492
6ZVK|1|e2|G|493
6ZVK|1|e2|U|494
*
6ZVK|1|e2|A|660
6ZVK|1|e2|C|661
6ZVK|1|e2|C|662
6ZVK|1|e2|G|663
6ZVK|1|e2|G|664
6ZVK|1|e2|C|665
6ZVK|1|e2|G|666
6ZVK|1|e2|A|667
6ZVK|1|e2|C|668

Current chains

Chain e2

28S RIBOSOMAL RNA

Nearby chains

Chain J2

60S RIBOSOMAL PROTEIN EL28

Chain S2

60S RIBOSOMAL PROTEIN EL18

Chain t2

uL4