IL_6ZVK_117

3D structure

PDB id

6ZVK (explore in PDB, NAKB, or RNA 3D Hub)

Description

The Halastavi arva virus (HalV) intergenic region IRES promotes translation by the simplest possible initiation mechanism

Experimental method

ELECTRON MICROSCOPY

Resolution

3.49 Å

Loop

Sequence

CUUUC*GGG

Length

8 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6ZVK_117 not in the Motif Atlas

Geometric match to IL_1U6B_001

Geometric discrepancy: 0.2951

The information below is about IL_1U6B_001

Detailed Annotation

Isolated non-canonical cWW pair

Broad Annotation

Isolated non-canonical cWW pair

Motif group

IL_57744.1

Basepair signature

cWW-cWW-cWW

Number of instances in this motif group

22

Unit IDs

6ZVK|1|e2|C|511
6ZVK|1|e2|U|512
6ZVK|1|e2|U|513
6ZVK|1|e2|U|514
6ZVK|1|e2|C|515
*
6ZVK|1|e2|G|646
6ZVK|1|e2|G|647
6ZVK|1|e2|G|648

Current chains

Chain e2

28S RIBOSOMAL RNA

Nearby chains

Chain a7

60S ribosomal protein L13

Chain q2

uL15