IL_6ZVK_119

3D structure

PDB id

6ZVK (explore in PDB, NAKB, or RNA 3D Hub)

Description

The Halastavi arva virus (HalV) intergenic region IRES promotes translation by the simplest possible initiation mechanism

Experimental method

ELECTRON MICROSCOPY

Resolution

3.49 Å

Loop

Sequence

GC*GGC

Length

5 nucleotides

Bulged bases

6ZVK|1|e2|G|1288

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6ZVK_119 not in the Motif Atlas

Geometric match to IL_4LFB_036

Geometric discrepancy: 0.2992

The information below is about IL_4LFB_036

Detailed Annotation

Single bulged G

Broad Annotation

No text annotation

Motif group

IL_00225.13

Basepair signature

cWW-L-cWW

Number of instances in this motif group

49

Unit IDs

6ZVK|1|e2|G|708
6ZVK|1|e2|C|709
*
6ZVK|1|e2|G|1287
6ZVK|1|e2|G|1288
6ZVK|1|e2|C|1289

Current chains

Chain e2

28S RIBOSOMAL RNA

Nearby chains

Chain T2

60S ribosomal protein L6

Chain x2

eL33