IL_6ZVK_122

3D structure

PDB id

6ZVK (explore in PDB, NAKB, or RNA 3D Hub)

Description

The Halastavi arva virus (HalV) intergenic region IRES promotes translation by the simplest possible initiation mechanism

Experimental method

ELECTRON MICROSCOPY

Resolution

3.49 Å

Loop

Sequence

GAAGGCC*GCAGCAGCACUC

Length

19 nucleotides

Bulged bases

6ZVK|1|e2|G|933, 6ZVK|1|e2|A|935, 6ZVK|1|e2|C|936, 6ZVK|1|e2|U|937

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

6ZVK|1|e2|G|731
6ZVK|1|e2|A|732
6ZVK|1|e2|A|733
6ZVK|1|e2|G|734
6ZVK|1|e2|G|735
6ZVK|1|e2|C|736
6ZVK|1|e2|C|737
*
6ZVK|1|e2|G|927
6ZVK|1|e2|C|928
6ZVK|1|e2|A|929
6ZVK|1|e2|G|930
6ZVK|1|e2|C|931
6ZVK|1|e2|A|932
6ZVK|1|e2|G|933
6ZVK|1|e2|C|934
6ZVK|1|e2|A|935
6ZVK|1|e2|C|936
6ZVK|1|e2|U|937
6ZVK|1|e2|C|938

Current chains

Chain e2

28S RIBOSOMAL RNA

Nearby chains

Chain 62

60S RIBOSOMAL PROTEIN EL20

Chain Z2

Ribosomal protein L14

Chain t2

uL4