IL_6ZVK_123

3D structure

PDB id

6ZVK (explore in PDB, NAKB, or RNA 3D Hub)

Description

The Halastavi arva virus (HalV) intergenic region IRES promotes translation by the simplest possible initiation mechanism

Experimental method

ELECTRON MICROSCOPY

Resolution

3.49 Å

Loop

Sequence

GCG*CCC

Length

6 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6ZVK_123 not in the Motif Atlas

Geometric match to IL_4J50_003

Geometric discrepancy: 0.1497

The information below is about IL_4J50_003

Detailed Annotation

Isolated cWH basepair

Broad Annotation

Isolated cWH basepair

Motif group

IL_10892.1

Basepair signature

cWW-cHW-cWW

Number of instances in this motif group

39

Unit IDs

6ZVK|1|e2|G|740
6ZVK|1|e2|C|741
6ZVK|1|e2|G|742
*
6ZVK|1|e2|C|922
6ZVK|1|e2|C|923
6ZVK|1|e2|C|924

Current chains

Chain e2

28S RIBOSOMAL RNA

Nearby chains

Chain 62

60S RIBOSOMAL PROTEIN EL20

Chain Z2

Ribosomal protein L14