IL_6ZVK_125

3D structure

PDB id

6ZVK (explore in PDB, NAKB, or RNA 3D Hub)

Description

The Halastavi arva virus (HalV) intergenic region IRES promotes translation by the simplest possible initiation mechanism

Experimental method

ELECTRON MICROSCOPY

Resolution

3.49 Å

Loop

Sequence

GCCCAC*GCGC

Length

10 nucleotides

Bulged bases

6ZVK|1|e2|C|999

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

6ZVK|1|e2|G|996
6ZVK|1|e2|C|997
6ZVK|1|e2|C|998
6ZVK|1|e2|C|999
6ZVK|1|e2|A|1000
6ZVK|1|e2|C|1001
*
6ZVK|1|e2|G|1044
6ZVK|1|e2|C|1045
6ZVK|1|e2|G|1046
6ZVK|1|e2|C|1047

Current chains

Chain e2

28S RIBOSOMAL RNA

Nearby chains