IL_6ZVK_128

3D structure

PDB id

6ZVK (explore in PDB, NAKB, or RNA 3D Hub)

Description

The Halastavi arva virus (HalV) intergenic region IRES promotes translation by the simplest possible initiation mechanism

Experimental method

ELECTRON MICROSCOPY

Resolution

3.49 Å

Loop

Sequence

CAC*GAGGUUCUCUCGG

Length

16 nucleotides

Bulged bases

6ZVK|1|e2|A|1078, 6ZVK|1|e2|G|1223, 6ZVK|1|e2|U|1226, 6ZVK|1|e2|U|1230

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

6ZVK|1|e2|C|1077
6ZVK|1|e2|A|1078
6ZVK|1|e2|C|1079
*
6ZVK|1|e2|G|1221
6ZVK|1|e2|A|1222
6ZVK|1|e2|G|1223
6ZVK|1|e2|G|1224
6ZVK|1|e2|U|1225
6ZVK|1|e2|U|1226
6ZVK|1|e2|C|1227
6ZVK|1|e2|U|1228
6ZVK|1|e2|C|1229
6ZVK|1|e2|U|1230
6ZVK|1|e2|C|1231
6ZVK|1|e2|G|1232
6ZVK|1|e2|G|1233

Current chains

Chain e2

28S RIBOSOMAL RNA

Nearby chains

Chain R2

Ribosomal_L6e_N domain-containing protein

Chain U2

uL30

Chain t2

uL4