IL_6ZVK_142

3D structure

PDB id

6ZVK (explore in PDB, NAKB, or RNA 3D Hub)

Description

The Halastavi arva virus (HalV) intergenic region IRES promotes translation by the simplest possible initiation mechanism

Experimental method

ELECTRON MICROSCOPY

Resolution

3.49 Å

Loop

Sequence

GC*GGU

Length

5 nucleotides

Bulged bases

6ZVK|1|e2|G|1577

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6ZVK_142 not in the Motif Atlas

Geometric match to IL_4V9F_026

Geometric discrepancy: 0.1516

The information below is about IL_4V9F_026

Detailed Annotation

Single bulged G

Broad Annotation

No text annotation

Motif group

IL_28408.2

Basepair signature

cWW-L-cWW

Number of instances in this motif group

69

Unit IDs

6ZVK|1|e2|G|1550
6ZVK|1|e2|C|1551
*
6ZVK|1|e2|G|1576
6ZVK|1|e2|G|1577
6ZVK|1|e2|U|1578

Current chains

Chain e2

28S RIBOSOMAL RNA

Nearby chains

Chain 32

60S RIBOSOMAL PROTEIN EL19

Chain 92

60S RIBOSOMAL PROTEIN UL2

Chain I2

ribosomal protein eL43