IL_6ZVK_144

3D structure

PDB id

6ZVK (explore in PDB, NAKB, or RNA 3D Hub)

Description

The Halastavi arva virus (HalV) intergenic region IRES promotes translation by the simplest possible initiation mechanism

Experimental method

ELECTRON MICROSCOPY

Resolution

3.49 Å

Loop

Sequence

GGUC*GUC

Length

7 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6ZVK_144 not in the Motif Atlas

Homologous match to IL_8C3A_034

Geometric discrepancy: 0.1625

The information below is about IL_8C3A_034

Detailed Annotation

Major groove platform with extra cWW

Broad Annotation

No text annotation

Motif group

IL_63959.1

Basepair signature

cWW-cSH-cWW-cWW

Number of instances in this motif group

18

Unit IDs

6ZVK|1|e2|G|1586
6ZVK|1|e2|G|1587
6ZVK|1|e2|U|1588
6ZVK|1|e2|C|1589
*
6ZVK|1|e2|G|1605
6ZVK|1|e2|U|1606
6ZVK|1|e2|C|1607

Current chains

Chain e2

28S RIBOSOMAL RNA

Nearby chains

Chain C2

Ribosomal protein L37