IL_6ZVK_149
3D structure
- PDB id
- 6ZVK (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- The Halastavi arva virus (HalV) intergenic region IRES promotes translation by the simplest possible initiation mechanism
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.49 Å
Loop
- Sequence
- CGGUAA*UAAAUG
- Length
- 12 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_6ZVK_149 not in the Motif Atlas
- Geometric match to IL_7A0S_027
- Geometric discrepancy: 0.1972
- The information below is about IL_7A0S_027
- Detailed Annotation
- 5x5 Sarcin-Ricin with intercalated A; G-bulge
- Broad Annotation
- Sarcin-Ricin; G-bulge
- Motif group
- IL_81631.1
- Basepair signature
- cWW-L-R-cSH-R-R-L-R-cWW
- Number of instances in this motif group
- 2
Unit IDs
6ZVK|1|e2|C|1732
6ZVK|1|e2|G|1733
6ZVK|1|e2|G|1734
6ZVK|1|e2|U|1735
6ZVK|1|e2|A|1736
6ZVK|1|e2|A|1737
*
6ZVK|1|e2|U|1792
6ZVK|1|e2|A|1793
6ZVK|1|e2|A|1794
6ZVK|1|e2|A|1795
6ZVK|1|e2|U|1796
6ZVK|1|e2|G|1797
Current chains
- Chain e2
- 28S RIBOSOMAL RNA
Nearby chains
- Chain 72
- eL21
- Chain G2
- 60S ribosomal protein L5
- Chain L2
- Ribosomal protein L10 (Predicted)
- Chain U2
- uL30
- Chain X2
- Ribosomal protein L10 (Predicted)
- Chain d2
- 5S ribosomal RNA; 5S rRNA
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