IL_6ZVK_157
3D structure
- PDB id
- 6ZVK (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- The Halastavi arva virus (HalV) intergenic region IRES promotes translation by the simplest possible initiation mechanism
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.49 Å
Loop
- Sequence
- UUU*AGA
- Length
- 6 nucleotides
- Bulged bases
- None detected
- QA status
- Self-complementary:
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_6ZVK_157 not in the Motif Atlas
- Homologous match to IL_5TBW_047
- Geometric discrepancy: 0.0875
- The information below is about IL_5TBW_047
- Detailed Annotation
- Isolated cWS basepair
- Broad Annotation
- No text annotation
- Motif group
- IL_52767.5
- Basepair signature
- cWW-L-R-cWW
- Number of instances in this motif group
- 28
Unit IDs
6ZVK|1|e2|U|1860
6ZVK|1|e2|U|1861
6ZVK|1|e2|U|1862
*
6ZVK|1|e2|A|1870
6ZVK|1|e2|G|1871
6ZVK|1|e2|A|1872
Current chains
- Chain e2
- 28S RIBOSOMAL RNA
Nearby chains
- Chain 72
- eL21
- Chain L2
- Ribosomal protein L10 (Predicted)
- Chain X2
- Ribosomal protein L10 (Predicted)
- Chain d2
- 5S ribosomal RNA; 5S rRNA
- Chain r2
- 60S ribosomal protein L29
Coloring options: