IL_6ZVK_166

3D structure

PDB id

6ZVK (explore in PDB, NAKB, or RNA 3D Hub)

Description

The Halastavi arva virus (HalV) intergenic region IRES promotes translation by the simplest possible initiation mechanism

Experimental method

ELECTRON MICROSCOPY

Resolution

3.49 Å

Loop

Sequence

GCAG*CCUGC

Length

9 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

6ZVK|1|e2|G|1964
6ZVK|1|e2|C|1965
6ZVK|1|e2|A|1966
6ZVK|1|e2|G|1967
*
6ZVK|1|e2|C|2017
6ZVK|1|e2|C|2018
6ZVK|1|e2|U|2019
6ZVK|1|e2|G|2020
6ZVK|1|e2|C|2021

Current chains

Chain e2

28S RIBOSOMAL RNA

Nearby chains

Chain E2

60S RIBOSOMAL PROTEIN EL40

Chain K2

60S acidic ribosomal protein P0