IL_6ZVK_177

3D structure

PDB id

6ZVK (explore in PDB, NAKB, or RNA 3D Hub)

Description

The Halastavi arva virus (HalV) intergenic region IRES promotes translation by the simplest possible initiation mechanism

Experimental method

ELECTRON MICROSCOPY

Resolution

3.49 Å

Loop

Sequence

ACG*CU

Length

5 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6ZVK_177 not in the Motif Atlas

Geometric match to IL_7RQB_058

Geometric discrepancy: 0.2197

The information below is about IL_7RQB_058

Detailed Annotation

Single stack bend

Broad Annotation

Single stack bend

Motif group

IL_76488.4

Basepair signature

cWW-L-cWW

Number of instances in this motif group

36

Unit IDs

6ZVK|1|e2|A|2477
6ZVK|1|e2|C|2478
6ZVK|1|e2|G|2479
*
6ZVK|1|e2|C|2499
6ZVK|1|e2|U|2500

Current chains

Chain e2

28S RIBOSOMAL RNA

Nearby chains

Chain h2

5.8S ribosomal RNA; 5.8S rRNA

Chain m2

60S RIBOSOMAL PROTEIN UL23