IL_6ZVK_183

3D structure

PDB id

6ZVK (explore in PDB, NAKB, or RNA 3D Hub)

Description

The Halastavi arva virus (HalV) intergenic region IRES promotes translation by the simplest possible initiation mechanism

Experimental method

ELECTRON MICROSCOPY

Resolution

3.49 Å

Loop

Sequence

CAG*CGUG

Length

7 nucleotides

Bulged bases

6ZVK|1|e2|U|2687

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6ZVK_183 not in the Motif Atlas

Geometric match to IL_4V9F_076

Geometric discrepancy: 0.2194

The information below is about IL_4V9F_076

Detailed Annotation

Isolated tHS basepair with bulges

Broad Annotation

No text annotation

Motif group

IL_85599.2

Basepair signature

cWW-tHS-cWW

Number of instances in this motif group

9

Unit IDs

6ZVK|1|e2|C|2646
6ZVK|1|e2|A|2647
6ZVK|1|e2|G|2648
*
6ZVK|1|e2|C|2685
6ZVK|1|e2|G|2686
6ZVK|1|e2|U|2687
6ZVK|1|e2|G|2688

Current chains

Chain e2

28S RIBOSOMAL RNA

Nearby chains

Chain y2

eL34