IL_6ZVK_194

3D structure

PDB id

6ZVK (explore in PDB, NAKB, or RNA 3D Hub)

Description

The Halastavi arva virus (HalV) intergenic region IRES promotes translation by the simplest possible initiation mechanism

Experimental method

ELECTRON MICROSCOPY

Resolution

3.49 Å

Loop

Sequence

GGGUC*GGCGCCUAGC

Length

15 nucleotides

Bulged bases

6ZVK|1|e2|U|3595, 6ZVK|1|e2|A|3596

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

6ZVK|1|e2|G|2901
6ZVK|1|e2|G|2902
6ZVK|1|e2|G|2903
6ZVK|1|e2|U|2904
6ZVK|1|e2|C|2905
*
6ZVK|1|e2|G|3589
6ZVK|1|e2|G|3590
6ZVK|1|e2|C|3591
6ZVK|1|e2|G|3592
6ZVK|1|e2|C|3593
6ZVK|1|e2|C|3594
6ZVK|1|e2|U|3595
6ZVK|1|e2|A|3596
6ZVK|1|e2|G|3597
6ZVK|1|e2|C|3598

Current chains

Chain e2

28S RIBOSOMAL RNA

Nearby chains

Chain 32

60S RIBOSOMAL PROTEIN EL19

Chain G3

Ribosomal protein S11

Chain c3

40S ribosomal protein S8