IL_6ZVK_197

3D structure

PDB id

6ZVK (explore in PDB, NAKB, or RNA 3D Hub)

Description

The Halastavi arva virus (HalV) intergenic region IRES promotes translation by the simplest possible initiation mechanism

Experimental method

ELECTRON MICROSCOPY

Resolution

3.49 Å

Loop

Sequence

CCAG*CG

Length

6 nucleotides

Bulged bases

6ZVK|1|e2|C|3701

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6ZVK_197 not in the Motif Atlas

Homologous match to IL_8C3A_089

Geometric discrepancy: 0.0878

The information below is about IL_8C3A_089

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_88739.5

Basepair signature

cWW-L-cWW

Number of instances in this motif group

12

Unit IDs

6ZVK|1|e2|C|3700
6ZVK|1|e2|C|3701
6ZVK|1|e2|A|3702
6ZVK|1|e2|G|3703
*
6ZVK|1|e2|C|3749
6ZVK|1|e2|G|3750

Current chains

Chain e2

28S RIBOSOMAL RNA

Nearby chains

Chain 92

60S RIBOSOMAL PROTEIN UL2

Chain K3

Small subunit ribosomal RNA; SSU rRNA