IL_6ZVK_198

3D structure

PDB id

6ZVK (explore in PDB, NAKB, or RNA 3D Hub)

Description

The Halastavi arva virus (HalV) intergenic region IRES promotes translation by the simplest possible initiation mechanism

Experimental method

ELECTRON MICROSCOPY

Resolution

3.49 Å

Loop

Sequence

UGC*GUAAA

Length

8 nucleotides

Bulged bases

6ZVK|1|e2|A|3746, 6ZVK|1|e2|A|3747

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6ZVK_198 not in the Motif Atlas

Geometric match to IL_6CZR_128

Geometric discrepancy: 0.268

The information below is about IL_6CZR_128

Detailed Annotation

Single bulged G, near cWW

Broad Annotation

Single bulged G, near cWW

Motif group

IL_52767.5

Basepair signature

cWW-L-R-cWW

Number of instances in this motif group

28

Unit IDs

6ZVK|1|e2|U|3704
6ZVK|1|e2|G|3705
6ZVK|1|e2|C|3706
*
6ZVK|1|e2|G|3744
6ZVK|1|e2|U|3745
6ZVK|1|e2|A|3746
6ZVK|1|e2|A|3747
6ZVK|1|e2|A|3748

Current chains

Chain e2

28S RIBOSOMAL RNA

Nearby chains

Chain 92

60S RIBOSOMAL PROTEIN UL2

Chain K3

Small subunit ribosomal RNA; SSU rRNA