IL_6ZVK_207

3D structure

PDB id

6ZVK (explore in PDB, NAKB, or RNA 3D Hub)

Description

The Halastavi arva virus (HalV) intergenic region IRES promotes translation by the simplest possible initiation mechanism

Experimental method

ELECTRON MICROSCOPY

Resolution

3.49 Å

Loop

Sequence

GA*UACC

Length

6 nucleotides

Bulged bases

6ZVK|1|e2|A|4385

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6ZVK_207 not in the Motif Atlas

Homologous match to IL_5TBW_094

Geometric discrepancy: 0.1248

The information below is about IL_5TBW_094

Detailed Annotation

Minor groove platform

Broad Annotation

No text annotation

Motif group

IL_18604.1

Basepair signature

cWW-tSH-L-R-tHH-tHS-cWW

Number of instances in this motif group

46

Unit IDs

6ZVK|1|e2|G|3916
6ZVK|1|e2|A|3917
*
6ZVK|1|e2|U|4384
6ZVK|1|e2|A|4385
6ZVK|1|e2|C|4386
6ZVK|1|e2|C|4387

Current chains

Chain e2

28S RIBOSOMAL RNA

Nearby chains

Chain 92

60S RIBOSOMAL PROTEIN UL2