IL_6ZVK_208

3D structure

PDB id

6ZVK (explore in PDB, NAKB, or RNA 3D Hub)

Description

The Halastavi arva virus (HalV) intergenic region IRES promotes translation by the simplest possible initiation mechanism

Experimental method

ELECTRON MICROSCOPY

Resolution

3.49 Å

Loop

Sequence

UAG*UGGG

Length

7 nucleotides

Bulged bases

6ZVK|1|e2|G|4183

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6ZVK_208 not in the Motif Atlas

Homologous match to IL_8C3A_100

Geometric discrepancy: 0.1427

The information below is about IL_8C3A_100

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_38958.10

Basepair signature

cWW-cWW-cWW-tHS

Number of instances in this motif group

9

Unit IDs

6ZVK|1|e2|U|3927
6ZVK|1|e2|A|3928
6ZVK|1|e2|G|3929
*
6ZVK|1|e2|U|4181
6ZVK|1|e2|G|4182
6ZVK|1|e2|G|4183
6ZVK|1|e2|G|4184

Current chains

Chain e2

28S RIBOSOMAL RNA

Nearby chains

Chain 12

Ribosomal protein L15

Chain 92

60S RIBOSOMAL PROTEIN UL2

Chain F2

eL42