IL_6ZVK_215

3D structure

PDB id

6ZVK (explore in PDB, NAKB, or RNA 3D Hub)

Description

The Halastavi arva virus (HalV) intergenic region IRES promotes translation by the simplest possible initiation mechanism

Experimental method

ELECTRON MICROSCOPY

Resolution

3.49 Å

Loop

Sequence

GAU*AC

Length

5 nucleotides

Bulged bases

6ZVK|1|e2|A|4292

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6ZVK_215 not in the Motif Atlas

Geometric match to IL_4V88_399

Geometric discrepancy: 0.2914

The information below is about IL_4V88_399

Detailed Annotation

Single bulged A

Broad Annotation

No text annotation

Motif group

IL_31462.1

Basepair signature

cWW-L-cWW

Number of instances in this motif group

127

Unit IDs

6ZVK|1|e2|G|4291
6ZVK|1|e2|A|4292
6ZVK|1|e2|U|4293
*
6ZVK|1|e2|A|4317
6ZVK|1|e2|C|4318

Current chains

Chain e2

28S RIBOSOMAL RNA

Nearby chains

Chain F2

eL42

Chain r2

60S ribosomal protein L29