IL_6ZVK_220

3D structure

PDB id

6ZVK (explore in PDB, NAKB, or RNA 3D Hub)

Description

The Halastavi arva virus (HalV) intergenic region IRES promotes translation by the simplest possible initiation mechanism

Experimental method

ELECTRON MICROSCOPY

Resolution

3.49 Å

Loop

Sequence

UUG*UG

Length

5 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6ZVK_220 not in the Motif Atlas

Geometric match to IL_5TBW_104

Geometric discrepancy: 0.1656

The information below is about IL_5TBW_104

Detailed Annotation

Major groove platform

Broad Annotation

No text annotation

Motif group

IL_48779.2

Basepair signature

cWW-L-cWW

Number of instances in this motif group

16

Unit IDs

6ZVK|1|e2|U|4403
6ZVK|1|e2|U|4404
6ZVK|1|e2|G|4405
*
6ZVK|1|e2|U|4439
6ZVK|1|e2|G|4440

Current chains

Chain e2

28S RIBOSOMAL RNA

Nearby chains

Chain L2

Ribosomal protein L10 (Predicted)

Chain X2

Ribosomal protein L10 (Predicted)