IL_6ZVK_222

3D structure

PDB id

6ZVK (explore in PDB, NAKB, or RNA 3D Hub)

Description

The Halastavi arva virus (HalV) intergenic region IRES promotes translation by the simplest possible initiation mechanism

Experimental method

ELECTRON MICROSCOPY

Resolution

3.49 Å

Loop

Sequence

CCAAG*CGACG

Length

10 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6ZVK_222 not in the Motif Atlas

Homologous match to IL_8C3A_114

Geometric discrepancy: 0.1426

The information below is about IL_8C3A_114

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_65585.1

Basepair signature

cWW-L-R-tSH-tHS-cWW

Number of instances in this motif group

13

Unit IDs

6ZVK|1|e2|C|4412
6ZVK|1|e2|C|4413
6ZVK|1|e2|A|4414
6ZVK|1|e2|A|4415
6ZVK|1|e2|G|4416
*
6ZVK|1|e2|C|4426
6ZVK|1|e2|G|4427
6ZVK|1|e2|A|4428
6ZVK|1|e2|C|4429
6ZVK|1|e2|G|4430

Current chains

Chain e2

28S RIBOSOMAL RNA

Nearby chains

Chain E2

60S RIBOSOMAL PROTEIN EL40

Chain L2

Ribosomal protein L10 (Predicted)

Chain X2

Ribosomal protein L10 (Predicted)