IL_6ZVK_225

3D structure

PDB id

6ZVK (explore in PDB, NAKB, or RNA 3D Hub)

Description

The Halastavi arva virus (HalV) intergenic region IRES promotes translation by the simplest possible initiation mechanism

Experimental method

ELECTRON MICROSCOPY

Resolution

3.49 Å

Loop

Sequence

CU*AACG

Length

6 nucleotides

Bulged bases

6ZVK|1|e2|A|4518, 6ZVK|1|e2|C|4519

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6ZVK_225 not in the Motif Atlas

Geometric match to IL_5TBW_109

Geometric discrepancy: 0.1225

The information below is about IL_5TBW_109

Detailed Annotation

Multiple bulged bases

Broad Annotation

No text annotation

Motif group

IL_24807.2

Basepair signature

cWW-cWW

Number of instances in this motif group

16

Unit IDs

6ZVK|1|e2|C|4458
6ZVK|1|e2|U|4459
*
6ZVK|1|e2|A|4517
6ZVK|1|e2|A|4518
6ZVK|1|e2|C|4519
6ZVK|1|e2|G|4520

Current chains

Chain e2

28S RIBOSOMAL RNA

Nearby chains

Chain 52

uL3

Chain k2

eL14

Chain w2

60S RIBOSOMAL PROTEIN UL13