IL_6ZVK_238

3D structure

PDB id

6ZVK (explore in PDB, NAKB, or RNA 3D Hub)

Description

The Halastavi arva virus (HalV) intergenic region IRES promotes translation by the simplest possible initiation mechanism

Experimental method

ELECTRON MICROSCOPY

Resolution

3.49 Å

Loop

Sequence

CGCGGAGC*GAACCUG

Length

15 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

6ZVK|1|e2|C|4739
6ZVK|1|e2|G|4740
6ZVK|1|e2|C|4741
6ZVK|1|e2|G|4742
6ZVK|1|e2|G|4743
6ZVK|1|e2|A|4744
6ZVK|1|e2|G|4745
6ZVK|1|e2|C|4746
*
6ZVK|1|e2|G|4954
6ZVK|1|e2|A|4955
6ZVK|1|e2|A|4956
6ZVK|1|e2|C|4957
6ZVK|1|e2|C|4958
6ZVK|1|e2|U|4959
6ZVK|1|e2|G|4960

Current chains

Chain e2

28S RIBOSOMAL RNA

Nearby chains

Chain x2

eL33