IL_6ZVK_239

3D structure

PDB id

6ZVK (explore in PDB, NAKB, or RNA 3D Hub)

Description

The Halastavi arva virus (HalV) intergenic region IRES promotes translation by the simplest possible initiation mechanism

Experimental method

ELECTRON MICROSCOPY

Resolution

3.49 Å

Loop

Sequence

GCCUCGGAUAGC*GUGCGGAGUGC

Length

23 nucleotides

Bulged bases

6ZVK|1|e2|C|4756, 6ZVK|1|e2|C|4757, 6ZVK|1|e2|U|4763, 6ZVK|1|e2|C|4871, 6ZVK|1|e2|G|4872, 6ZVK|1|e2|A|4874

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

6ZVK|1|e2|G|4755
6ZVK|1|e2|C|4756
6ZVK|1|e2|C|4757
6ZVK|1|e2|U|4758
6ZVK|1|e2|C|4759
6ZVK|1|e2|G|4760
6ZVK|1|e2|G|4761
6ZVK|1|e2|A|4762
6ZVK|1|e2|U|4763
6ZVK|1|e2|A|4764
6ZVK|1|e2|G|4765
6ZVK|1|e2|C|4766
*
6ZVK|1|e2|G|4868
6ZVK|1|e2|U|4869
6ZVK|1|e2|G|4870
6ZVK|1|e2|C|4871
6ZVK|1|e2|G|4872
6ZVK|1|e2|G|4873
6ZVK|1|e2|A|4874
6ZVK|1|e2|G|4875
6ZVK|1|e2|U|4876
6ZVK|1|e2|G|4877
6ZVK|1|e2|C|4878

Current chains

Chain e2

28S RIBOSOMAL RNA

Nearby chains

Chain 62

60S RIBOSOMAL PROTEIN EL20

Chain T2

60S ribosomal protein L6

Chain W2

60S RIBOSOMAL PROTEIN UL6

Chain Z2

Ribosomal protein L14

Chain w2

60S RIBOSOMAL PROTEIN UL13